--- license: apache-2.0 task_categories: - text-classification language: - en tags: - LucaOne - Bioinformatics - Protein - Gene - RNA - DNA - Nucleic Acid - Interaction - AI4Biology - Bio - Biology - AI4Science pretty_name: LucaGroup/LucaOne-Downstream-Task-Datasets --- - split: dev path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv - split: test path: dataset/ncRNAFam/gene/multi_class/test/test.csv - split: label path: dataset/ncRNAFam/gene/multi_class/label.txt - config_name: ncRPI data_files: - split: train path: dataset/ncRPI/gene_protein/binary_class/train/train.csv - split: dev path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv - split: test path: dataset/ncRPI/gene_protein/binary_class/test/test.csv - config_name: PPI data_files: - split: train path: dataset/PPI/protein/binary_class/train/train.csv - split: dev path: dataset/PPI/protein/binary_class/dev/dev.csv - split: test path: dataset/PPI/protein/binary_class/test/test.csv - config_name: ProtLoc data_files: - split: train path: dataset/ProtLoc/protein/multi_class/train/train.csv - split: dev path: dataset/ProtLoc/protein/multi_class/dev/dev.csv - split: test path: dataset/ProtLoc/protein/multi_class/test/test.csv - config_name: ProtLocCDSGene data_files: - split: train path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv - split: dev path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv - split: test path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv - config_name: ProtLocCDSProt data_files: - split: train path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv - split: dev path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv - split: test path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv - split: label path: dataset/ProtLocCDSProt/protein/multi_class/label.txt - config_name: ProtStab data_files: - split: train path: dataset/ProtStab/protein/regression/train/train.csv - split: dev path: dataset/ProtStab/protein/regression/dev/dev.csv - split: test path: dataset/ProtStab/protein/regression/test/test.csv - config_name: SpeciesTax data_files: - split: train path: dataset/SpeciesTax/gene/multi_class/train/train.csv - split: dev path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv - split: test path: dataset/SpeciesTax/gene/multi_class/test/test.csv - config_name: SupKTax data_files: - split: train path: dataset/SupKTax/gene/multi_class/train/train.csv - split: dev path: dataset/SupKTax/gene/multi_class/dev/dev.csv - split: test path: dataset/SupKTax/gene/multi_class/test/test.csv --- # LucaOne-Downstream-Task-Datasets This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4). ## Dataset Structure This dataset includes three splits and a label info file: - `train`(training dataset) - `dev` (validation dataset) - `test` (testing dataset) - `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1}) ## Usage: ```python from datasets import load_dataset # load ncRPI dataset ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI") ``` ## Github https://github.com/LucaOne/ - split: dev path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv - split: test path: dataset/ncRNAFam/gene/multi_class/test/test.csv - split: label path: dataset/ncRNAFam/gene/multi_class/label.txt - config_name: ncRPI data_files: - split: train path: dataset/ncRPI/gene_protein/binary_class/train/train.csv - split: dev path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv - split: test path: dataset/ncRPI/gene_protein/binary_class/test/test.csv - config_name: PPI data_files: - split: train path: dataset/PPI/protein/binary_class/train/train.csv - split: dev path: dataset/PPI/protein/binary_class/dev/dev.csv - split: test path: dataset/PPI/protein/binary_class/test/test.csv - config_name: ProtLoc data_files: - split: train path: dataset/ProtLoc/protein/multi_class/train/train.csv - split: dev path: dataset/ProtLoc/protein/multi_class/dev/dev.csv - split: test path: dataset/ProtLoc/protein/multi_class/test/test.csv - config_name: ProtLocCDSGene data_files: - split: train path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv - split: dev path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv - split: test path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv - config_name: ProtLocCDSProt data_files: - split: train path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv - split: dev path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv - split: test path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv - split: label path: dataset/ProtLocCDSProt/protein/multi_class/label.txt - config_name: ProtStab data_files: - split: train path: dataset/ProtStab/protein/regression/train/train.csv - split: dev path: dataset/ProtStab/protein/regression/dev/dev.csv - split: test path: dataset/ProtStab/protein/regression/test/test.csv - config_name: SpeciesTax data_files: - split: train path: dataset/SpeciesTax/gene/multi_class/train/train.csv - split: dev path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv - split: test path: dataset/SpeciesTax/gene/multi_class/test/test.csv - config_name: SupKTax data_files: - split: train path: dataset/SupKTax/gene/multi_class/train/train.csv - split: dev path: dataset/SupKTax/gene/multi_class/dev/dev.csv - split: test path: dataset/SupKTax/gene/multi_class/test/test.csv --- # LucaOne-Downstream-Task-Datasets This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4). ## Dataset Structure This dataset includes three splits and a label info file: - `train`(training dataset) - `dev` (validation dataset) - `test` (testing dataset) - `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1}) ## Usage: ```python from datasets import load_dataset # load ncRPI dataset ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI") ``` ## Github https://github.com/LucaOne/