AmelieSchreiber/BioKinema-bucket
4.16 GB
Amelie Schreiber
AmelieSchreiber
AI & ML interests
Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.
Recent Activity
published an article about 6 hours ago
ToricGT: A Five-Paper Program for Algebraic, Geometric, and Graph-Structured Reasoning Agents updated a model 4 days ago
AmelieSchreiber/toricgt-checkpoints updated a dataset 12 days ago
AmelieSchreiber/toricgt-curated-splitsOrganizations
Posts 3
Post
185
# New Spin on Old Methods
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- https://huggingface.co/blog/AmelieSchreiber/toricgt
- https://huggingface.co/collections/AmelieSchreiber/toricgt
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~A
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- https://huggingface.co/blog/AmelieSchreiber/toricgt
- https://huggingface.co/collections/AmelieSchreiber/toricgt
---
~A
Articles 19
Article
ToricGT: A Five-Paper Program for Algebraic, Geometric, and Graph-Structured Reasoning Agents
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
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AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 8 • 6 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 1
A retraining of a TokenGT, embedding space GFlowNets GoT reasoning 4x4M-Soft-MoE model with tropical ring attention and geometric algebra constraints
ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.
-
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1
Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3
Token Classification • Updated • 8 • 6 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2
Token Classification • Updated • 1 -
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1
Token Classification • Updated • 1
models 59
AmelieSchreiber/toricgt-checkpoints
Updated
AmelieSchreiber/UBio-E2Former-LSR
Updated
AmelieSchreiber/LucaOne
Updated • 7
AmelieSchreiber/RoseTTAFold2-PPI
Updated
AmelieSchreiber/AlphaChip
Updated • 2
AmelieSchreiber/IgDiff
Updated
AmelieSchreiber/DiG
Updated
AmelieSchreiber/Graphormer
Updated
AmelieSchreiber/esm_mlmppi_ph50_40K
Updated
AmelieSchreiber/esm_mlmppi_ph50_v3
Fill-Mask • 0.7B • Updated • 7
datasets 24
AmelieSchreiber/toricgt-curated-splits
Viewer • Updated • 5.79M • 2.43k
AmelieSchreiber/DynamicPDB
Updated • 21
AmelieSchreiber/ATLAS
Updated • 22
AmelieSchreiber/iska-net-2_base
Updated • 29
AmelieSchreiber/ReactZyme
Viewer • Updated • 258k • 59
AmelieSchreiber/pha_clustered_protein_complexes_40K
Viewer • Updated • 40k • 33
AmelieSchreiber/pha_clustered_protein_complexes_30K
Viewer • Updated • 30k • 26
AmelieSchreiber/pha_clustered_protein_complexes
Viewer • Updated • 10k • 35
AmelieSchreiber/interaction_pairs
Viewer • Updated • 118k • 17
AmelieSchreiber/12M_binding_sites
Updated • 9