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Datasets:
Forithmus
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MR-RATE-coreg

Tasks:
Image-to-Text
Text-to-Image
Image Classification
Languages:
English
Size:
10K<n<100K
Tags:
brain-mri
radiology
science
huggingscience
3d-medical-imaging
medical
License:
Dataset card Files
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Community

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Terms and Conditions for Using the MR-RATE Dataset 1. Acceptance of Terms Accessing and using the MR-RATE dataset implies your agreement to these terms and conditions. If you disagree with any part, please refrain from using the dataset.

2. Permitted Use

  • The dataset is intended solely for academic, research, and educational purposes.
  • Any commercial exploitation of the dataset without prior permission is strictly forbidden.
  • You must adhere to all relevant laws, regulations, and research ethics, including data privacy and protection standards.

3. Data Protection and Privacy

  • Acknowledge the presence of sensitive information within the dataset and commit to maintaining data confidentiality.
  • Direct attempts to re-identify individuals from the dataset are prohibited.
  • Ensure compliance with data protection laws such as GDPR and HIPAA.

4. Attribution

  • Cite the dataset and acknowledge the providers in any publications resulting from its use.
  • Claims of ownership or exclusive rights over the dataset or derivatives are not permitted.

5. Redistribution

  • Redistribution of the dataset or any portion thereof is not allowed.
  • Sharing derived data must respect the privacy and confidentiality terms set forth.

6. Disclaimer
The dataset is provided "as is" without warranty of any kind, either expressed or implied, including but not limited to the accuracy or completeness of the data.

7. Limitation of Liability
Under no circumstances will the dataset providers be liable for any claims or damages resulting from your use of the dataset.

8. Access Revocation
Violation of these terms may result in the termination of your access to the dataset.

9. Amendments
The terms and conditions may be updated at any time; continued use of the dataset signifies acceptance of the new terms.

10. Governing Law
These terms are governed by the laws of the location of the dataset providers, excluding conflict of law rules.

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Accessing and using the MR-RATE dataset signifies your acknowledgment and agreement to these terms and conditions.

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MR-RATE: A Vision-Language Foundation Model and Dataset for Magnetic Resonance Imaging

Paper (Coming soon)   |   GitHub   |   Dataset Repositories   |   Model Weights (Coming soon)

This is the MR-RATE-coreg repository, part of the MR-RATE dataset release. It contains co-registered brain MRI volumes in which all imaging sequences within each study have been spatially aligned to a common T1-weighted reference frame. For full dataset details, native-space MRI volumes, radiology reports, metadata, and data splits, please refer to the MR-RATE repository.

Co-registered Brain MRI Volumes

Within each study, a T1-weighted brain MRI volume is selected as the center modality. All other brain MRI sequences acquired in the same study, referred to as moving modalities, are rigidly registered to the center modality using ANTs, bringing all sequences into a common anatomical coordinate frame per study.

This repository provides:

  • Center modalities (in NIfTI format) — All center modality brain MRI volumes along with their corresponding brain masks and defacing masks, copied from the native-space dataset in the MR-RATE repository for convenience
  • Co-registered moving modalities (in NIfTI format) — All moving modality brain MRI volumes registered to the T1-weighted center modality
  • Registration transforms (in .mat format) — The ANTs transform files for each registration, enabling users to apply or invert them in their own workflows

Study folders are zipped to comply with Hugging Face's per-repository file count limits.

A detailed guide explaining the dataset organization, the preprocessing steps used, and download instructions is coming soon.

Citing Us

When using this dataset, please consider citing the following related papers:

Coming soon

Ethical Approval

Information for researchers who require ethical approval documentation for grant applications is coming soon.

License

We are committed to fostering innovation and collaboration in the research community. To this end, all elements of the MR-RATE dataset are released under a Creative Commons Attribution (CC BY-NC-SA 4.0) license. This licensing framework ensures that our contributions can be freely used for non-commercial research purposes, while also encouraging contributions and modifications, provided that the original work is properly cited and any derivative works are shared under similar terms.

For commercial inquiries related to MR-RATE, please contact: contact@forithmus.com.
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